PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g012470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 312aa    MW: 35027 Da    PI: 5.7588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g012470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44.2e-2195196199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     f+k+l++sdv++++r++lpkk ae+h   ++ +e++ l++ed++g  +W++k++y  +++s++yvl+ ++ +Fv+a+gL+ gDf++ +  ++ ++
  Csa04g012470.1  95 FQKELKNSDVSSLRRMILPKKAAEAHlpALECKEGIPLRMEDLDGrHVWTFKYRYwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIMVY--QNlDS 186
                     99**************************777778899********789*******89999999***9.*******************9..77788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      ++v++++++
  Csa04g012470.1 187 NNYVIQARKA 196
                     8889888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2988200IPR015300DNA-binding pseudobarrel domain
CDDcd100177.08E-2893195No hitNo description
SuperFamilySSF1019362.22E-2293195IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.06695197IPR003340B3 DNA binding domain
SMARTSM010198.2E-2395197IPR003340B3 DNA binding domain
PfamPF023621.1E-1795196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMANENVETK ASPLMASVDH HHGLGSGSGH DHHQGLSASV PLLGVNSKKR RMPRQRRSSS  60
SFKLLSFPPL MPLSSHVPTP RPARKIDPGK LRFLFQKELK NSDVSSLRRM ILPKKAAEAH  120
LPALECKEGI PLRMEDLDGR HVWTFKYRYW PNNNSRMYVL ENTGDFVNAH GLQLGDFIMV  180
YQNLDSNNYV IQARKASEEE GEEDVTMVEE DDVYTNLTKI ENTVVNDLLI QDFNHQSSNS  240
NNNKSSYYYP VIDDITTNTA SFVYDTTALT SNDTPLDYLG GSTTTANNYY SDFGSFEGLG  300
SVENISLDDF Y*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304970.0AJ630497.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g26790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502623.10.0PREDICTED: B3 domain-containing transcription factor FUS3-like
SwissprotQ9LW310.0FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLD7LR960.0D7LR96_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__447__AT3G26790.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-138B3 family protein